•	0_Latest assembly release
	Jinhua_pig_T2T_v0.fa
	
•	1_The sequencing dataset(PacBio, ONT, HiC, WGS and RNAseq data) generated for Jinhua_pig_T2T
		1_1_PacBio.fastq.gz  
		1_2_ONT.tar.gz  
		1_3_HiC.tar.gz  
		1_4_WGS.tar.gz  
		1_5_RNAseq.tar.gz
  
•	2_The genotype dataset for the 905 individual pigs
	2_905_individual_in_PHARP.tar.gz
  
•	3_other required data files
	Annotations files: coding gene, Repeats/transposable elements/ncRNAs /other annotations (GFF format);
	3_1_Annotations_files.tar.gz：
		t2t_6gap_maker_f.gff(coding gene),JH_t2t_6_chronly.fa.out.gff(transposable elements/ncRNAs /other annotations)

•	Coding gene nucleotide sequences (fasta);
	3_2_Coding_gene_nucleotide_sequences.fa

•	Coding gene translated sequences (protein fasta);
	3_3_Coding_gene_translated_sequences.fa

•	BUSCO results output files, including full_table, missing_list and short_summary files;
	3_4_BUSCO_results_output_files.tar.gz：
		missing_busco_list.tsv,short_summary.txt,full_table.tsv

•	SNP annotations (in VCF format or similar);
	3_5_SNP_annotations.tar.gz(JH-T2T vs Sscrofa11.1):
		out.vcf,results_indel.vcf , results_snp.vcf

•	De novo transcriptome assembly (fasta);
	3_6_De_novo_transcriptome_assembly.fa

•	Gene expression levels (fpkm table);
	3_7_Transcriptomic_aligned_reads_Gene_expression_levels_FPKM.csv

•	The circos plot files supporting Figure 1D and S7;
	3_8_circos_files_supporting_Figure_1D.tar.gz：
		1000k_gc.bed, gene-density.txt, TT-density.txt, SNP-density.txt, INDEL-density.txt:GC content, Gene density,  TE density, SNPs, InDels for Figure 1D in circos_files_supporting_Figure_1D,underlying data for Figure 1D in the associated manuscript.
	3_9_circos_files_supporting_Figure_S7.tar.gz：
		cent.txt, ont.candidate_peaks.bed, ont.circos_legend.txt, ont.hic.count.100000.inter_chr, ont.hic.count.100000.intra_chr, ont.trf.count, ont.trf.fa:underlying data for Figure S7 in the associated manuscript.

•	The Hi-C data supporting Figure 1B, especially the BAM mapped reads and hic files.
	3_10_HiC_data_supporting_Figure_1B.tar.gz：
		HiC_data_supporting_Figure_1B：underlying data for Figure 1B in the associated manuscript.