Article Title

 Integrative Genomic Analysis Reveals Shared Loci for Reproductive and Productive Traits in Yorkshire Pigs

  Data

 Genotype.tar.gz

  Article Title

 The first near-complete genome assembly of pig: enabling more accurate genetic research

  Data

    Jinhua_pig_T2T_v0.fa

    Jinhua_pig.mat.fa

    Jinhua_pig.pat.fa

2. The sequencing datasets (PacBio, ONT, HiC, WGS and RNAseq data) generated for Jinhua_pig_T2T

    1_1_PacBio.fastq.gz

    1_2_ONT.tar.gz

    1_3_HiC.tar.gz

    1_4_WGS.tar.gz

    1_5_RNAseq.tar.gz

    2_905_individual_in_PHARP.tar.gz

4. Other required data files

    3_1_Annotations_files.tar.gz

    3_2_Coding_gene_nucleotide_sequences.fa

    3_3_Coding_gene_translated_sequences.fa

    3_4_BUSCO_results_output_files.tar.gz

    3_5_1_SNP_annotations.tar.gz

    3_5_2_SNP_annotations.vcf

    3_6_De_novo_transcriptome_assembly.fa

    3_7_Transcriptomic_aligned_reads_Gene_expression_levels_FPKM.csv

    3_8_circos_files_supporting_Figure_1D.tar.gz

    3_9_circos_files_supporting_Figure_S7.tar.gz

    3_10_HiC_data_supporting_Figure_1B.tar.gz

 readme.txt

 md5.txt

  Article Title

 Multi-ancestry GWAS of Feed Efficiency and Feeding Behaviors in Pigs: Implications for Breeding Improvement and Potential Links to Human Health

  Data

 GWASsummary.tar.gz

 SupplementaryTables.xlsx

  Article Title

 Pangenome-based genotyping of structural variation reveals their functional implication in gene regulation of pigs

  Data

 PigPangenomeData.tgz

  Article Title

 Cross-ancestry meta-GWAS provides insights to the understanding of semen traits in pigs

  Data

 SemenTraits.tar.gz

  Article Title

 A federated learning approach for genomic selection in pigs

  Data

 FederatedLearning.tar.gz

  Article Title

 基于基因组和转录组信息的金华猪分子种质特性研究

  Data

 学位论文-附表.xlsx

  Article Title

 基于多种选择信号对集约化下猪精神健康基因的挖掘和注释

  Data

 Attachment.xlsx

  Article Title

 The role of SOCS3 in regulating meat quality in Jinhua pigs

  Data

 jinhua_western_QC_vcf.tar.gz

  Article Title

 Pig pangenome graph reveals non-reference sequences and their associations with environmental adaptations

  Data

 SupplementaryData.tar.gz

  Article Title

 Integrated microbiome-metabolome-genome axis data of Laiwu and Lulai pigs

  Data

 Website

 Supplementary Information.xlsx

  Article Title

 Holo-omic analysis reveals the influence of gut microbiota on obesity indicators in Jinhua pigs

  Data

 RNA&16s rRNA

  Article Title

 A web tool for the global identificationof pig breeds

  Data

 Code

  Article Title

 Integration of Selection Signatures and Protein Interactions Reveals NR6A1, PAPPA2, and PIK3C2B as the Promising Candidate Genes Underlying the Characteristics of Licha Black Pig

  Data

 Genotype

  Article Title

 Molecular design based breeding：a kinship index based selection method for complex traits in small livestock populations

  Data

 R code

  Article Title

 The effect of high-density genotypic data and different methods on joint genomic prediction: a case study in Large White pigs

  Data

 Phenotype

 Genotype

  Article Title

 Runs of Homozygosity Revealed Agriculture Characteristics of Hu Sheep

  Data

 Data

  Article Title

 Genome-wide epistatic interactions of litter size at birth in Chinese indigenous pigs

  Data

 DataSet

  Article Title

 Genome-wide selection signatures detection in Shanghai Holstein cattle population identified genes related to adaption, health and reproduction traits

  Data

 DataSet

  Article Title

 Applications of Support Vector Machine in Genomic Prediction in Pig and Maize Populations

  Data

 DataSet

  Article Title

 Blautia wexlerae regulates the early muscle development of the host through butyrate metabolism

  Data

 Mouse DataSet

 Pig DataSet

  Project Title

 Duroc pig muscle scRNA-seq h5ad

  Data

 muscle_scRNA-seq data

  Article Title

 Single-nucleus Atlas Provides Insights into Changes in the Evolution of the Pig Hippocampus

  Data

 Hippocampus_scRNA-seq data

  Article Title

 IPGCA: A Comprehensive Single Cell Atlas of 1,074,127 Porcine Intestinal Cells Revealing Cellular Dynamics, Genetic Regulation, and Cross-Species Conservation

  Data

    D1_1.zip

    D1_2.zip

    D1_3.zip

    D1_4.zip

    D1_5.zip

    D2_1.zip

    D2_2.zip

    D2_3.zip

    D2_4.zip

    D2_5.zip

3. The gut tissue scRNA-seq of wild boar

    Ss_1.zip

    Ss_2.zip

    Ss_3.zip

    Ss_4.zip

    Ss_5.zip

4. metadata of all gut tissue samples

 data_info.xlsx